Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs35547810 chr8:91690923 T/C cg16814680 chr8:91681699 NA -1.17 -35.38 -0.88 2.71E-122 Box Plot
BLCA rs35899541 chr2:99732825 GA/G cg15544633 chr2:99771531 LIPT1;TSGA10 1.17 31.68 0.85 1.08E-108 Box Plot
BLCA rs36071868 chr2:99737120 G/A cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 32.58 0.86 4.81E-112 Box Plot
BLCA rs3738729 chr1:227191227 C/T cg10327440 chr1:227177885 CDC42BPA -1.14 -31.8 -0.85 3.77E-109 Box Plot
BLCA rs3768425 chr1:227178127 A/G cg10327440 chr1:227177885 CDC42BPA -1.15 -32.58 -0.86 4.75E-112 Box Plot
BLCA rs3795449 chr1:227181838 T/G cg10327440 chr1:227177885 CDC42BPA -1.14 -31.96 -0.85 1.01E-109 Box Plot
BLCA rs3795451 chr1:227181923 C/T cg10327440 chr1:227177885 CDC42BPA -1.14 -31.45 -0.85 8.06E-108 Box Plot
BLCA rs3915667 chr13:100184391 C/T cg25919922 chr13:100150906 NA 1.16 32.55 0.86 6.14E-112 Box Plot
BLCA rs4236824 chr8:91684776 C/T cg16814680 chr8:91681699 NA 1.17 34.95 0.87 9.18E-121 Box Plot
BLCA rs4236825 chr8:91687774 A/G cg16814680 chr8:91681699 NA 1.14 34.73 0.87 5.97E-120 Box Plot
BLCA rs4236826 chr8:91687831 G/A cg16814680 chr8:91681699 NA -1.18 -36.03 -0.88 1.33E-124 Box Plot
BLCA rs4236828 chr8:91689081 C/T cg16814680 chr8:91681699 NA -1.14 -31.29 -0.85 3.48E-107 Box Plot
BLCA rs4301409 chr8:91679451 C/T cg16814680 chr8:91681699 NA -1.19 -36.28 -0.88 1.65E-125 Box Plot
BLCA rs4323436 chr8:91683028 C/G cg16814680 chr8:91681699 NA -1.15 -31.5 -0.85 5.35E-108 Box Plot
BLCA rs4330649 chr8:91681221 T/C cg16814680 chr8:91681699 NA -1.19 -36.28 -0.88 1.65E-125 Box Plot